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熊杰 研究员

博士研究生
职  称: 研究员
学  历: 博士研究生
联系方式: 86-27-68780209
电子邮件: xiongjie#ihb.ac.cn(请改#为@)
办  公  室: 2号实验楼710
个人网页:

个人简介:

男,博士,研究员,博士生导师。2007年毕业于南京农业大学,获农学学士学位。2012年毕业于中国科学院水生生物研究所水生生物学专业,获理学博士学位。2014-2015年在美国密歇根大学从事博士后研究。长期以来,一直以原生动物纤毛虫,尤其是模式生物--四膜虫为研究对象,开展进化基因组学研究。

PLoS BiologyGenes & DevelopmentNucleic Acids ResearchDatabase等学术期刊上发表论文50多篇;主持国家自然科学基金青年基金项目1项、面上项目2项、科技部重点研发计划子课题2项;2021年获国家自然科学基金优秀青年科学基金项目资助;2016年入选中国科学院青年创新促进会会员;2020年入选中国科学院青年创新促进会优秀会员;任中国动物学会原生动物学分会第十一届理事会常务理事、副秘书长。

 

 

研究领域:原生动物进化基因组学

招生专业:遗传学

招生方向:原生动物进化基因组学

已发表论文:https://scholar.google.com/citations?user=6TZzVZkAAAAJ&hl=en

 

代表性论文:

(1) Wang, Guangying, Su Wang, Xiaocui Chai, Jing Zhang, Wentao Yang, Chuanqi Jiang, Kai Chen, Wei Miao, and Jie Xiong. "A strategy for complete telomere-to-telomere assembly of ciliate macronuclear genome using ultra-high coverage Nanopore data." Computational and Structural Biotechnology Journal 19 (2021): 1928-1932.

(2) Zhang, Jing, Kai Chen, Chuanqi Jiang, Wentao Yang, Siyu Gu, Guangying Wang, Yishan Lu, Wei Miao, and Jie Xiong. "Bacteria-Derived Hemolysis-Related Genes Widely Exist in Scuticociliates." Microorganisms 8, no. 11 (2020): 1838.

(3) Xiong, Jie; Yang, Wentao; Chen, Kai; Jiang, Chuanqi; Ma, Yang; Chai, Xiaocui; Yan, Guanxiong; Wang, Guangying; Yuan, Dongxia; Liu, Yifan; Bidwell, Shelby L; Zafar, Nikhat; Hadjithomas, Michalis; Krishnakumar, Vivek; Coyne,Robert S; Orias, Eduardo; Miao, Wei*; Hidden genomic evolution in a morphospecies-The landscape of rapidly evolving genes in Tetrahymena., PLoS Biology, 2019, 17(6): e3000294.

 (4) Zhao Xiaolu#; Xiong Jie#; Mao Fengbiao#; Sheng Yalan; Chen Xiao; Feng Lifang; Dui Wen; Yang Wentao; Kapusta Aurelie; Feschotte Cedric; Robert S. Coyne; (5) Wei Miao; Shan Gao*; Yifan Liu*; RNAi-dependent Polycomb repression controls transposable elements in Tetrahymena, Genes & Development, 2019, 2019(33): 348-364.

 (6) Xiong, Jie#; Gao, Shan#; Dui, Wen; Yang, Wentao; Chen, Xiao; Taverna, Sean D; Pearlman, Ronald E; Ashlock, Wendy; Miao, Wei*; Liu, Yifan*; Dissecting relative contributions of cis- and trans-determinants to nucleosome distribution by comparing Tetrahymena macronuclear and micronuclear chromatin. , Nucleic Acids Research, 2016, 44(21): 10091-10105.

(7) Xiong, Jie, Jinmei Feng, Dongxia Yuan, Jun Zhou, and Wei Miao. "Tracing the structural evolution of eukaryotic ATP binding cassette transporter superfamily." Scientific reports 5, no. 1 (2015): 1-15.

(8) Gao, Shan#; Xiong, Jie#; Zhang, Chunchao; Berquist, Brian R.; Yang, Rendong; Zhao, Meng; Molascon, Anthony J.; Kwiatkowski, Shaina Y.; Yuan, Dongxia; Qin, Zhaohui; Wen, Jianfan; Kapler, Geoffrey M.; Andrews, Philip C.; Miao, Wei*; Liu, Yifan*; Impaired replication elongation in Tetrahymena mutants deficient in histone H3 Lys 27 monomethylation , Genes & Development, 2013, 27 (15): 1662-1679.

(9) Xiong, Jie#; Lu, Yuming#; Feng, Jinmei#; Yuan, Dongxia; Tian, Miao; Chang, Yue; Fu, Chengjie; Wang, Guangying; Zeng, Honghui*; Miao, Wei*; Tetrahymena Functional Genomics Database (TetraFGD): an integrated resource for Tetrahymena functional genomics, DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2013, 2013: bat008.

(10) Xiong J, Lu X, Zhou Z, Chang Y, Yuan D, Tian M, Zhou Z, Wang L, Fu C, Orias E, Miao W. Transcriptome analysis of the model protozoan, Tetrahymena thermophila, using deep RNA sequencing. PLoS One. 2012 Feb 7;7(2):e30630.